PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P07060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 229aa    MW: 25261.6 Da    PI: 6.6525
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P07060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like962.8e-3078131155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  GSMUA_Achr5P07060_001  78 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 131
                            59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.1975134IPR017930Myb domain
SuperFamilySSF466899.85E-2075135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-3076136IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-2479131IPR006447Myb domain, plants
PfamPF002493.2E-881130IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGEAASDADY DRISAVAGDG GDDGSVLEWE FGLPSGDDLV PLSQSLIPPE LASAFRINPE  60
PARTLLDADE PSHKTRRRPR LVWTPQLHKR FVDVVAHLGI KNAVPKTIMQ LMNVEGLTRE  120
NVASHLQKYR LYLKRMQGLS NEGPSSSDHL FASTPVPQSL REQQLPVPMP YAVPTMIPMP  180
AYGMPHPHNG HGSPMGMVPV NNHQAGGAFY GFEAHHYPYG AFGERHKDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-3478134157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399863.11e-154PREDICTED: transcription factor PCL1-like
SwissprotQ94DH31e-64PCL1_ORYSJ; Transcription factor PCL1
TrEMBLM0SWD51e-168M0SWD5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P07060_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.34e-55G2-like family protein