PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P07380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 232aa    MW: 23925.5 Da    PI: 4.3549
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P07380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-082551127
                           TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktI 27
                           +g+W +eEd  l ++v+q+G+++W++I
  GSMUA_Achr5P07380_001 25 KGSWNPEEDAVLMRLVEQHGPRNWTAI 51
                           799**********************99 PP
2Myb_DNA-binding42.81.2e-1351841247
                           HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +v a++++G++ W+tIar ++ gRt++ +k++w++ 
  GSMUA_Achr5P07380_001 51 IVAAHALYGNK-WATIARLLP-GRTDNAVKNHWNST 84
                           799********.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.8452089IPR017930Myb domain
SuperFamilySSF466893.2E-152481IPR009057Homeodomain-like
SMARTSM007173.5E-132487IPR001005SANT/Myb domain
PfamPF002498.2E-72551IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-82551IPR009057Homeodomain-like
CDDcd001671.65E-122785No hitNo description
PfamPF002494.2E-105284IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-145286IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVIYVVGEEE MAVVKGGDVG EQPVKGSWNP EEDAVLMRLV EQHGPRNWTA IVAAHALYGN  60
KWATIARLLP GRTDNAVKNH WNSTLRRRLQ AAADAVDASA SERPVPSSPM QLDAAATAPV  120
AADSDEPGES DSGSLSGKRP CLRDDDATDG SAGGSGPVTS LTLGRLGEGG GTDGGGGRLW  180
EEPTAGMCLL AIIREMIVEE VTSYMNRLPS GGGSGGGSSI IIGTDSASNG QD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-1724893105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400144.11e-121PREDICTED: transcription factor MYB44-like
TrEMBLM0SWG71e-164M0SWG7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P07380_0011e-165(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-24myb domain protein 73