PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P07460_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 209aa MW: 22633.8 Da PI: 8.359

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P07460_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.8	6.5e-42	39	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca++C+++pyf ++p+kfa +hk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++gvi++lqqq++ GSMUA_Achr5P07460_001 39 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASAHKVFGASNVSKMLMEVSESQRADAANSLVYEADIRLRDPVYGCMGVISALQQQVQ 126 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 l+aela++k+e GSMUA_Achr5P07460_001 127 ALEAELAAVKAE 138 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.369	38	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-41	39	136	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MLCHREKLDE VGKKIKREVD VSDHMARPGP VGTLNKTTPC AACKLLRRRC AQECPFSPYF 60 SPHEPQKFAS AHKVFGASNV SKMLMEVSES QRADAANSLV YEADIRLRDP VYGCMGVISA 120 LQQQVQALEA ELAAVKAEIL KYKYRQTNAA ILPTSHATAL LASSVEISVA APPRLTTTAP 180 ATSSSSMYTA ASSSTDYSSI TNENVAYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-43	33	142	5	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-43	33	142	5	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399908.1	1e-151	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-74	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	M0SWH5	1e-153	M0SWH5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P07460_001	1e-154	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-70	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]