PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P07660_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 302aa MW: 32929.9 Da PI: 7.3373

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P07660_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.1e-39	54	114	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG+ rnvPvG+grrk+k+s GSMUA_Achr5P07660_001 54 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGTTRNVPVGAGRRKSKHSA 114 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	51	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	56	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MSDAKDPAIK LFGRTIPLPE SLPPPPEEEA EQTAIPDATP ATEADDGDPV LRKPDKILPC 60 PRCNSMDTKF CYYNNYNINQ PRHFCKNCQR YWTAGGTTRN VPVGAGRRKS KHSASQVRQI 120 ISILYGENEG PSCASSVNGS NFVENGLAGN PTQIEQNGMQ GYCNGVTTMP QFSCYPVAPW 180 AYPWSPGWTN VAPIVRCSPE FVQRPENGNG SPTLGKHSRD ATLQGEEKTG KSLWVPKTLR 240 IDDPDEAAKS SIWATLGIKP EVGIFEPLKS KAESKARTSD AAHLLQANPA ALSRSHSFQE 300 ST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020108553.1	2e-90	cyclic dof factor 1-like
TrEMBL	M0SWJ5	0.0	M0SWJ5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P07660_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	4e-74	cycling DOF factor 1