PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P08730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 247aa    MW: 26077.4 Da    PI: 9.0507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P08730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002282104123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+C+ Cgk F++   L  H  +H
  GSMUA_Achr5P08730_001  82 YECSVCGKAFPSYQALGGHKTSH 104
                            99**********99998888777 PP
2zf-C2H2110.0013135155121
                            EEETTTTEEESSHHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                            ++C+ C+ksF++   L  H+r
  GSMUA_Achr5P08730_001 135 HECSVCHKSFPTGQALGGHMR 155
                            78**************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-981157No hitNo description
PfamPF139124.7E-1482106IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.74182109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-482104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.009682104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
PfamPF139121.4E-13134159IPR007087Zinc finger, C2H2
PROSITE profilePS501579.536135157IPR007087Zinc finger, C2H2
SMARTSM003550.026135157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAVDTVETVV SRDETTPTTP YQVESWAKGK RSKRPRASSS PAVSEKDDGR IPTEEEFLAL  60
CLMMLSRGVN GRSDLRTATQ SYECSVCGKA FPSYQALGGH KTSHRKPVAA AATAGGDAVT  120
SASTSGATSV PGRAHECSVC HKSFPTGQAL GGHMRCHYEG VNARAAATSS SGVASSGKDQ  180
GFDLNLPPAS QRLPTMGLIG GGWDKEKRKK EEEEVLSPLA LTNKKPRVLT PSTRGIEATP  240
LTLISFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400024.11e-160PREDICTED: zinc finger protein ZAT6-like
TrEMBLM0SWV20.0M0SWV2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P08730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-33C2H2 family protein