PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P09030_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 161aa    MW: 18605.6 Da    PI: 10.0321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P09030_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-081357654
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           + +E++RR ++++  ++L +l+P +   +++ ++  + L +A +YIk+L
  GSMUA_Achr5P09030_001 13 KTVEKNRRIHMKNLCSKLSSLIPVS---KNT-VTQKDQLDQAFDYIKDL 57
                           789*********************9...554.666799*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.572757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-111169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-51357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MASSGGTEKL ERKTVEKNRR IHMKNLCSKL SSLIPVSKNT VTQKDQLDQA FDYIKDLKER  60
VDRLRELKEM RSRVMIGFRP AQVEVRNLDP NLEVILVCGS RTRFMFHEVI SVLEEEGVEV  120
INASFSTVGD RIFHSIHCQV IITRIGLDPS RIDQRLKQLV R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400066.11e-113PREDICTED: uncharacterized protein LOC103984307
TrEMBLM0SWY21e-113M0SWY2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09030_0011e-114(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.14e-27bHLH family protein