PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P09110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 128aa    MW: 14587.8 Da    PI: 8.4572
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P09110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-113175345
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           +WT+e  + + da +++ ++   +W+++ar +  g+t +++k ++ 
  GSMUA_Achr5P09110_001 31 SWTEEQNKMFEDALAKYDKDtpdRWNKVARAVR-GKTVEEVKRHYE 75
                           7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-52676IPR009057Homeodomain-like
PROSITE profilePS5129311.5782782IPR017884SANT domain
SMARTSM007172.3E-92880IPR001005SANT/Myb domain
SuperFamilySSF466896.58E-143086IPR009057Homeodomain-like
CDDcd001671.54E-83178No hitNo description
PfamPF002492.1E-83175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MLEFGSMKKI PCVEVRGKGG KLYGKEEVSS SWTEEQNKMF EDALAKYDKD TPDRWNKVAR  60
AVRGKTVEEV KRHYELLVED IGRIENGHMP YGKYLSTSRR GTLIALPTVH CSSPYIFSSS  120
LLCLELNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2432971176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681790.17e-71PREDICTED: protein RADIALIS-like 4
SwissprotF4JVB84e-27RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLM0SWZ02e-90M0SWZ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09110_0013e-91(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-29RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]