PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P09160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 252aa    MW: 28157.1 Da    PI: 10.6911
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P09160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.51.3e-1622110187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                            +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++     + r   r+ +qCk++++ l+k+yk +k++  ++    +s++p+f+
  GSMUA_Achr5P09160_001  22 CWSEGETSALVDAWGDRYVELNRGNLRQKQWQEVADAVnsrsgAGRRPPRTDVQCKNRIDTLKKKYKVEKARIAGG---GESQWPFFS 106
                            7*************************************98776666668899*********************996...5669***** PP

               trihelix  84 qlea 87 
                            +lea
  GSMUA_Achr5P09160_001 107 RLEA 110
                            *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-2820111No hitNo description
Gene3DG3DSA:1.10.10.608.3E-42289IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDKREAASTR PPNPALPYRE DCWSEGETSA LVDAWGDRYV ELNRGNLRQK QWQEVADAVN  60
SRSGAGRRPP RTDVQCKNRI DTLKKKYKVE KARIAGGGES QWPFFSRLEA LVGSAPPPAA  120
KKPSASPPLA LPLPSHRKGS ALPAALALRP AEPREKRTAA ATSSSSRSGK KPKRGREGEG  180
NGIRELARAI MSFAEIYERV EESKQRQMME LEKQRMEFAK ALEFQKMQII VDLQVQLAKI  240
KRAKRSDTDS YS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400082.11e-172PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG86e-39ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM0SWZ50.0M0SWZ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-40sequence-specific DNA binding transcription factors