PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P09180_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 79aa MW: 8819.93 Da PI: 5.1566

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P09180_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00017	43	65	8	30
HHHHHHHHHHHHHHHHHCTSCCC CS HLH 8 rErrRRdriNsafeeLrellPka 30 + r+R +r+N+++ eL + + + GSMUA_Achr5P09180_001 43 AARKRLNRMNEKLKELETQMEAL 65 67**************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD593487	0.001	23	67	IPR033378	Protein BRICK1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007015	Biological Process	actin filament organization
GO:0031209	Cellular Component	SCAR complex
GO:0032403	Molecular Function	protein complex binding

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MLARKEEVGS KKAQVARDAS TTITTATGHV MAVSEFIAQF DEAARKRLNR MNEKLKELET 60 QMEALEAEMS KANDSSDWS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400088.1	3e-50	PREDICTED: uncharacterized protein LOC103984321
TrEMBL	M0SWZ7	4e-49	M0SWZ7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P09180_001	7e-50	(Musa acuminata)