PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P09240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 243aa    MW: 26114 Da    PI: 9.5648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P09240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-1382126347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  GSMUA_Achr5P09240_001  82 PWTEEEHRSFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 126
                            8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.40975131IPR017930Myb domain
SuperFamilySSF466894.41E-1876132IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-1878130IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.3E-1179125IPR009057Homeodomain-like
SMARTSM007176.2E-979129IPR001005SANT/Myb domain
CDDcd001672.09E-882127No hitNo description
PfamPF002491.3E-1082126IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVRKCSHCGH NGHNSRTCIN TRSSMVGGGG CLSYTYPAAS SSSPSSSSSS LGSIDEATQK  60
ISHGYLSDGL GGRTQERKKG VPWTEEEHRS FLIGLEKLGK GDWRGISRNF VTTRTPTQVA  120
SHAQKYFLRQ NSLNKKKRRS SLFDVVANCE GAAHNTASSK SDDASFSSEL HAPTLSLTMA  180
GHKASETTTI DLNSSGQEQV IQMPSSQSPS SMERTRAQLS NLDLELRISS SPGSLCLGTI  240
RVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400577.11e-154PREDICTED: transcription factor MYB1R1
SwissprotQ7XC573e-51MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLM0SX031e-178M0SX03_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09240_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-49MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]