PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P09470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 250aa    MW: 27627.4 Da    PI: 9.8641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P09470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-1797147256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr++  rg+WvAeIr p +   r r++lg++ ++e Aa a+++a+ kl+ge
  GSMUA_Achr5P09470_001  97 LYRGVRQRQ-RGKWVAEIRLPQS---RMRIWLGTYRSPESAAYAYDRAAYKLRGE 147
                            69****999.8*********943...49*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.38E-1896156No hitNo description
SMARTSM003802.5E-3197160IPR001471AP2/ERF domain
PROSITE profilePS5103221.53597154IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2097155IPR016177DNA-binding domain
PfamPF008474.4E-1197147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2898155IPR001471AP2/ERF domain
PRINTSPR003678.0E-1198109IPR001471AP2/ERF domain
PRINTSPR003678.0E-11136156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDGTVETLPP PLFPGQISAA LSEILLSGTN ALDSIFSHLP PPLPAAQSSA VLPLGSAVYF  60
RQTELLRRLS SQCHGHDARL DYRHCGADAA ERGKKTLYRG VRQRQRGKWV AEIRLPQSRM  120
RIWLGTYRSP ESAAYAYDRA AYKLRGEYAR LNFPNLQQAG DCPERLKLLR SAVDSKIQAI  180
CQRLGRRRPA RRSTAANVVK EKEKDTQAGA SQTSSSASAS TSCVSEMDGH CSLARMPSYD  240
PELIWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1594161270ATERF1
3gcc_A4e-1594161270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400661.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-34ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLM0SX260.0M0SX26_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09470_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-34related to AP2 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]