PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P09940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 238aa    MW: 26625.7 Da    PI: 11.0474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P09940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.8e-2186136155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  GSMUA_Achr5P09940_001  86 SHFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARSLRG 136
                            78********.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-2886146No hitNo description
PfamPF008471.1E-1386136IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2286145IPR016177DNA-binding domain
SMARTSM003805.3E-3687150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-3187145IPR001471AP2/ERF domain
PROSITE profilePS5103222.24787144IPR001471AP2/ERF domain
PRINTSPR003673.3E-108899IPR001471AP2/ERF domain
PRINTSPR003673.3E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRLPSGKRNQ WYYIKSRSGG CWVRPRPPVA VYIYITFPFA PSRTKPRYVL VMAVETIPTR  60
NAGSATVAVT GSKEAALTMG GGRKASHFRG VRKRPWGRFA AEIRDPWKKT RKWLGTFDTA  120
EEAARAYDEA ARSLRGPKAK TNFGNSVPVV EILPSAAASA VPAPQISWSL APPWRSGFLA  180
LAPAPNGQDM FLGWQSNQSK YSWYRFEAVK MVVSEQEEAK KKKKKSFDFD LNLPPPFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1984143262ATERF1
3gcc_A5e-1984143262ATERF1
5wx9_A1e-1880143771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400503.21e-132PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLM0SX731e-172M0SX73_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09940_0011e-173(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-23erf domain protein 9