PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P09950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 322aa    MW: 35809.5 Da    PI: 9.6824
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P09950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-1360108155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  GSMUA_Achr5P09950_001  60 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 108
                            78****9888.8*********3.....5**********99*************98 PP
2B3101.54.9e-32146247196
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+ tpsdv+k++rlv+pk++ae+h      g    +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v+F
  GSMUA_Achr5P09950_001 146 FDKAVTPSDVGKLNRLVIPKQHAEKHfplnqtGAAACKGVLLNFEDACGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDVVTF 233
                            89*************************8887755555999************************************************ PP

                            EE-SSSEE..EEEE CS
                     B3  83 kldgrsefelvvkv 96 
                            +++   e++l++++
  GSMUA_Achr5P09950_001 234 QRSTGPEKQLFIGW 247
                            *8866777788877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-2460115No hitNo description
SuperFamilySSF541711.44E-1760116IPR016177DNA-binding domain
PROSITE profilePS5103220.32361116IPR001471AP2/ERF domain
PfamPF008476.4E-961108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-2161116IPR001471AP2/ERF domain
SMARTSM003804.8E-2961122IPR001471AP2/ERF domain
PRINTSPR003679.4E-56273IPR001471AP2/ERF domain
PRINTSPR003679.4E-58298IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-41137253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-30143249IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-28144236No hitNo description
PROSITE profilePS5086313.944146250IPR003340B3 DNA binding domain
PfamPF023621.3E-28146248IPR003340B3 DNA binding domain
SMARTSM010191.4E-23146251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDTSSLEDAC SEIEKQSPPP RPRPPPPAPP KGLRRLGSGA SVVLEPEISI EAESRKLPSS  60
QYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAAQRFRGRD AVTNFKPLVE  120
TRDEDTAELS FLNSHSKAEI HREHLFDKAV TPSDVGKLNR LVIPKQHAEK HFPLNQTGAA  180
ACKGVLLNFE DACGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLRAGDV VTFQRSTGPE  240
KQLFIGWKTR TAGAHTADGV QATKPPVEVV RLFGVNIVKI PAAVSGDVSD RSGVGWAAKR  300
TRDMDLISSL ELFKKQCREE GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5714325911126DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400502.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-121RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLM0SX740.0M0SX74_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09950_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-121related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]