PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P09960_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 431aa MW: 47352.4 Da PI: 7.6851

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P09960_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	255	271	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C+ C+k+F+r n++ GSMUA_Achr5P09960_001 255 FSCTVCNKTFNRFNNMQ 271 89*********987765 PP
2	zf-C2H2	12.3	0.00053	344	366	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F + + ++H +++ GSMUA_Achr5P09960_001 344 FACRRCGKAFAVRGDWRTHEKNC 366 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.67E-5	327	364	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.2E-4	331	364	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.787	344	364	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MRPQKETEKD VREGAEKLGY RAANPSPNPT SVSVCVCILG VLWSLPRCWS HPPLPSSPPL 60 PALCLPSNLT QPNLLHSHPL ARALSLNHSL PTHSLAPSPS PPLLRTHIYL FPPPYSHPLL 120 LLYPVGMFSN GGSSLPSKTS DQEEDHSILL LSLWPPGSHA TPSPCSSPAS SSSTYAPPIA 180 PNWFHKQHHY FSHSSNQVED DSAVTIALSI GPPPGATSAC ASTIAMPTTV TGLNPVPSQY 240 WIPSAAEILI GNTQFSCTVC NKTFNRFNNM QQMHMWGHGS QYRRGSESLR GATRQMPSPS 300 LLKLPCYCCA EGCKNNIDHP RSRPLKDFRT LQTHYKRKHG ARSFACRRCG KAFAVRGDWR 360 THEKNCGKLW FCICGSDFKH KRSLKDHVRS FGSGHAPHIV ETMSFDEEEE EEEEEGDDGD 420 EEGNGDNGGA L

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MRPQKETEKD VREGAEKLGY RAANPSPNPT SVSVCVCILG VLWSLPRCWS HPPLPSSPPL  60
PALCLPSNLT QPNLLHSHPL ARALSLNHSL PTHSLAPSPS PPLLRTHIYL FPPPYSHPLL  120
LLYPVGMFSN GGSSLPSKTS DQEEDHSILL LSLWPPGSHA TPSPCSSPAS SSSTYAPPIA  180
PNWFHKQHHY FSHSSNQVED DSAVTIALSI GPPPGATSAC ASTIAMPTTV TGLNPVPSQY  240
WIPSAAEILI GNTQFSCTVC NKTFNRFNNM QQMHMWGHGS QYRRGSESLR GATRQMPSPS  300
LLKLPCYCCA EGCKNNIDHP RSRPLKDFRT LQTHYKRKHG ARSFACRRCG KAFAVRGDWR  360
THEKNCGKLW FCICGSDFKH KRSLKDHVRS FGSGHAPHIV ETMSFDEEEE EEEEEGDDGD  420
EEGNGDNGGA L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269\|PubMed:18643975, ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400647.2	0.0	PREDICTED: zinc finger protein WIP6-like
Swissprot	Q9FX68	1e-101	ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBL	M0SX75	0.0	M0SX75_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P09960_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11306	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-101	C2H2-like zinc finger protein