PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P10220_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Protein Properties

Length: 272aa MW: 29552 Da PI: 6.7973

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P10220_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.8	5.9e-11	99	142	57	98
TEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 57 gryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 ++yv+tkGW++Fvk+++L++gD+v F + g+ + +l++ + r GSMUA_Achr5P10220_001 99 QSYVMTKGWSRFVKEKRLDAGDIVSFGRGvGDsGGDHLYIDWKR 142 78************************965477666667666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-8	70	98	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-15	70	143	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.17E-11	72	124	No hit	No description
SMART	SM01019	0.0072	74	144	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.1E-10	99	145	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.0E-8	99	143	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEFSIRRDGF YMTEEEKQEE NSKYLSFVPL SSSFSSSSTS NAFRWHVGPS DSVGRSASDG 60 CNESNFFTGK EHMFDKVVTP SDVGKLNRLV IPKQYAENQS YVMTKGWSRF VKEKRLDAGD 120 IVSFGRGVGD SGGDHLYIDW KRRPDNHDLP RLPRIPLAGV SLGRPSGPGD QFLFFGSSLA 180 GPPQFGVQQG SGPPMAFVNS LPLLGNQSAA KRVRLFGVNL DCPESGGVPA SASQLQLSSS 240 LPFLPFPHES IGSSAAPSST SKEQHLSLDL DL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	8e-32	70	144	4	114	B3 domain-containing transcription factor NGA1
5os9_B	8e-32	70	144	4	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400639.1	1e-167	PREDICTED: B3 domain-containing protein Os02g0683500-like isoform X1
Swissprot	Q6EU30	1e-38	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBL	M0SXA1	0.0	M0SXA1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P10220_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-37	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]