PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P10470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 211aa    MW: 23008.8 Da    PI: 6.2325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P10470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1663110355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            y+G+r+++  g+Wv+eIr+p+    +  r++lg++ tae+Aa a++ a+ +l+g
  GSMUA_Achr5P10470_001  63 YRGIRYRS--GKWVSEIREPR----KaSRIWLGTYPTAEMAAVAYDVAAHALRG 110
                            9****976..*********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.40262118IPR001471AP2/ERF domain
SMARTSM003803.0E-2962124IPR001471AP2/ERF domain
CDDcd000181.61E-2663119No hitNo description
PfamPF008479.0E-1063110IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1863120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-2763119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAERPSDVHG HPHVHCWRAM EGGRASPPRL PELLSCCDQG GNAVQAESET RMRPDASRRH  60
LSYRGIRYRS GKWVSEIREP RKASRIWLGT YPTAEMAAVA YDVAAHALRG TDAVLNFPDE  120
IASRPAPASA SPNHIRAAAA EAAASLVPKP AAAAASHQHP GSYIDEEEIF DMPQLLVNMA  180
EGMLMSPPRL SPDRSDDPPE LSEGESLWSY P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1637120174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693726e-56AC169372.2 Sorghum bicolor clone SB_BBc0156J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400452.11e-152PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ904e-41ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLM0SXC61e-151M0SXC6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P10470_0011e-151(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-23ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]