PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P10510_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 795aa MW: 86240.4 Da PI: 7.1786

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P10510_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66	5.1e-21	116	171	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k GSMUA_Achr5P10510_001 116 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLSLEARQVKFWFQNRRTQMK 171 688999***********************************************999 PP
2	START	157.2	1.3e-49	295	544	1	205
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 ela++a++el+k+a+ +ep+W + e +n+de+ ++++ + + +ea ra+g+v+ ++ lve+l+d + +W +++ GSMUA_Achr5P10510_001 295 ELALTAMDELLKMAQMGEPLWIPGVdgskETLNYDEYDRSVPCCIGakpigFVSEATRATGAVIINSLALVETLMDAN-RWADMFPsi 381 5899****************99988788888888888887766699999***********************.******* PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156 + +t+ vis g g lqlm+aelq+lsplvp R + f+R+++ql + +w+ vdvS+d ++ + s++ +++lpSg+++++ GSMUA_Achr5P10510_001 382 vaRSTTTGVISGGmggsknGSLQLMQAELQVLSPLVPvRHVQFLRFCKQLADAVWAMVDVSIDGIRDST-SAQQTNCRRLPSGCVVQD 468 9***************************************************************9.9************* PP ECTCE...........................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 157 ksngh...........................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++ng+ +vtwveh++++++++h l+r+l++sg+a ga +wva+lqrqc GSMUA_Achr5P10510_001 469 LPNGYskltmwltllshhystrrvafstrrcgAQVTWVEHAEYDEATVHPLYRPLLRSGMALGAHRWVAALQRQCH 544 **************************999***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.7E-21	100	174	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.31E-20	104	173	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.864	113	173	IPR001356	Homeobox domain
SMART	SM00389	4.7E-19	114	177	IPR001356	Homeobox domain
CDD	cd00086	1.07E-18	116	173	No hit	No description
Pfam	PF00046	1.4E-18	116	171	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.59	286	548	IPR002913	START domain
SuperFamily	SSF55961	7.6E-24	289	472	No hit	No description
CDD	cd08875	5.07E-109	292	543	No hit	No description
Pfam	PF01852	1.6E-42	295	544	IPR002913	START domain
SMART	SM00234	7.7E-33	295	545	IPR002913	START domain
SuperFamily	SSF55961	7.6E-24	500	544	No hit	No description
SuperFamily	SSF55961	1.98E-20	564	764	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MSFRGLFDGG SGGGDRVVAD APYRSSIAMS AGSISQPFLT SPSLPNPVFS SPGLSLALQT 60 NMEGQGDAAV AGKGGRGEPD SLRRSKEDEN ESRSGGSDNL EVISGDDFEQ ENPRKKKRYH 120 RHTPQQIQEL EALFKECPHP DEKQRLELSK RLSLEARQVK FWFQNRRTQM KTQIERHENT 180 ILRQENDKLH AENLSIREAM RNPICSSCCG PAVLGDVSLE EQHLRIENAR LKDELDRVCS 240 LIGKFLGKPI SVLSGPVPVS ISNSSLELAV GTNAFGGLGS VVTTTLPPER FVLLELALTA 300 MDELLKMAQM GEPLWIPGVD GSKETLNYDE YDRSVPCCIG AKPIGFVSEA TRATGAVIIN 360 SLALVETLMD ANRWADMFPS IVARSTTTGV ISGGMGGSKN GSLQLMQAEL QVLSPLVPVR 420 HVQFLRFCKQ LADAVWAMVD VSIDGIRDST SAQQTNCRRL PSGCVVQDLP NGYSKLTMWL 480 TLLSHHYSTR RVAFSTRRCG AQVTWVEHAE YDEATVHPLY RPLLRSGMAL GAHRWVAALQ 540 RQCHSLAVLV SSSLPPGDNT TITPSGRRSM LKLAQRMTDN FCAGVCASSA HQWNKLRGGV 600 DIGEDVRVMT RQSVANPGEP PGVVLSAATS VWLPVAPQRL FDFLRNERLR SQWDILSNGG 660 PMQEMAHIAK GQDTTGNAVT LLRASAVSAD QSSMLILQET CTDASGSLVV YAPVDVPAMH 720 LVMSGGDSSY VALLPSGFAI LPDGRKAVGS LLTVAFQILV NSQPTAKLTV ESVETVNNLI 780 SCTVQKIKAA LRCEA

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MSFRGLFDGG SGGGDRVVAD APYRSSIAMS AGSISQPFLT SPSLPNPVFS SPGLSLALQT  60
NMEGQGDAAV AGKGGRGEPD SLRRSKEDEN ESRSGGSDNL EVISGDDFEQ ENPRKKKRYH  120
RHTPQQIQEL EALFKECPHP DEKQRLELSK RLSLEARQVK FWFQNRRTQM KTQIERHENT  180
ILRQENDKLH AENLSIREAM RNPICSSCCG PAVLGDVSLE EQHLRIENAR LKDELDRVCS  240
LIGKFLGKPI SVLSGPVPVS ISNSSLELAV GTNAFGGLGS VVTTTLPPER FVLLELALTA  300
MDELLKMAQM GEPLWIPGVD GSKETLNYDE YDRSVPCCIG AKPIGFVSEA TRATGAVIIN  360
SLALVETLMD ANRWADMFPS IVARSTTTGV ISGGMGGSKN GSLQLMQAEL QVLSPLVPVR  420
HVQFLRFCKQ LADAVWAMVD VSIDGIRDST SAQQTNCRRL PSGCVVQDLP NGYSKLTMWL  480
TLLSHHYSTR RVAFSTRRCG AQVTWVEHAE YDEATVHPLY RPLLRSGMAL GAHRWVAALQ  540
RQCHSLAVLV SSSLPPGDNT TITPSGRRSM LKLAQRMTDN FCAGVCASSA HQWNKLRGGV  600
DIGEDVRVMT RQSVANPGEP PGVVLSAATS VWLPVAPQRL FDFLRNERLR SQWDILSNGG  660
PMQEMAHIAK GQDTTGNAVT LLRASAVSAD QSSMLILQET CTDASGSLVV YAPVDVPAMH  720
LVMSGGDSSY VALLPSGFAI LPDGRKAVGS LLTVAFQILV NSQPTAKLTV ESVETVNNLI  780
SCTVQKIKAA LRCEA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400446.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC5-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	M0SXD0	0.0	M0SXD0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P10510_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]