PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P10530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 751aa    MW: 82250.5 Da    PI: 6.0418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P10530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000385535901355
                            HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            R++i +++ eLre++P+ a      K s  + L k+++++  Lq
  GSMUA_Achr5P10530_001 553 RQQIQDRLKELREIVPNgA------KCSIDALLDKTIKHMLFLQ 590
                            89***************66......8888889999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.912540589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-5553595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-4553594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00482553590No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MESVTEQFQY VDSHEAIEFC DQHGAFGFTS SSGDAYSCYQ NTNSFHEAYG EQLSYPSTLG  60
GQALAPNTLG SYHELNSHKS SMIAHVVETP LTCSTGDSRD FYNSFQNTSF MSRNSSLHLT  120
QQHNAAIVQA QVQMSPTTKL LSVSHCPVNS GAMYLKTNSC SNTNVKQGLS SGMRITFTKI  180
QLFLFCCMNK LYESCADSPS SRKFVLNDFM QRPRSSEIVK TYIYGAEKLP SPLGDLSGGK  240
PSGLLSSFAS EHIDDFATNH PDLSPESSLL FHSKGVPVTR QCDQQSEHVI DNTTAQNNEK  300
GVRSKSSAAS CNMITWSSGK QVENSISAAV NSLVLENDRQ DNSSISPMQL LSDNNLFDGI  360
EFDMRQNNFG HDLWDDVTMP VGRNNCSNRS AGTSNCISMM EMASISGTDK GLFSESGFQQ  420
LLDAINGDHV HKAPAHSSGA KYVHPISGSD LENQCSTSLC GPSVNRYQVP SVVLPPINGT  480
SGLLLPYCNS EVIHGSPKHE VSNSNICSWI DDSCSMNTEG SVLDQTKKPE EAAKVVKKRA  540
RPGESTRPRP KDRQQIQDRL KELREIVPNG AKCSIDALLD KTIKHMLFLQ SVTKYADKLK  600
QADEPKIIGE ESGVVLKDNS GGVGGGATWA YEVAGQTMVC PIIVEDLTPP GQMLVEMLCE  660
DRGLFLEIAD IIRGFGLIIL KGVMEIRERK IWARFLVEAN REVTRMDIFL SLIQLLQQNS  720
CLRSGDLANK IIDKGPPLFS GYHQSPIVSS S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389431.10.0PREDICTED: transcription factor LHW-like isoform X1
TrEMBLM0SXD20.0M0SXD2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P10530_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-50conserved peptide upstream open reading frame 7