PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P11330_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 241aa MW: 24691.1 Da PI: 7.8432

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P11330_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.2	9.1e-41	38	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ GSMUA_Achr5P11330_001 38 PCGACKFLRRKCVTGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQV 125 7*********************9989******************************************************** PP DUF260 88 eqlkaelallkee 100 +l+ael++l+++ GSMUA_Achr5P11330_001 126 VNLQAELSYLQAH 138 ******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.084	37	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-39	38	136	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSGKSPSVGV LGGGSGGAGG GGGGGSGGGG SAGGGTGPCG ACKFLRRKCV TGCIFAPYFD 60 SEQGAAHFAA VHKVFGASNV SKLLLHIPAH KRLDAVVTIC YEAQARLRDP VYGCVAHIFA 120 LQQQVVNLQA ELSYLQAHLA TLELPSPPPP PPPPSLVASM PFSISDLPSA ANLPSTVDLS 180 ALFDPLVQPL WPLQQQQLQL STSTRNLSES SGFGGGDLQA LARELLDRQR TATSEPPPVS 240 K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-37	34	139	7	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-37	34	139	7	111	LOB family transfactor Ramosa2.1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	30	SGGAGGGGGGGSGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400358.1	1e-172	PREDICTED: LOB domain-containing protein 18-like
Swissprot	O81323	9e-76	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	M0SXL2	1e-171	M0SXL2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P11330_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	4e-74	LOB domain-containing protein 18

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]