PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P12010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 355aa    MW: 39057.1 Da    PI: 8.7769
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P12010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.59.1e-3648103560
                 zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                             lkcprCdstntkfCyynnys +qPr+fCkaCrr+Wt+GG+lrnvPvGggr+++++
  GSMUA_Achr5P12010_001  48 PLKCPRCDSTNTKFCYYNNYSRTQPRHFCKACRRHWTEGGTLRNVPVGGGRKNKRS 103
                            689**********************************************9776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2331102IPR003851Zinc finger, Dof-type
PfamPF027013.8E-3149102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.61549103IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105187IPR003851Zinc finger, Dof-type
SMARTSM008353.5E-6230354IPR006045Cupin 1
SuperFamilySSF511821.29E-17250354IPR011051RmlC-like cupin domain
Gene3DG3DSA:2.60.120.103.3E-18251355IPR014710RmlC-like jelly roll fold
PfamPF001901.3E-14252354IPR006045Cupin 1
PRINTSPR004393.2E-18287303IPR00604411-S seed storage protein, plant
PRINTSPR004393.2E-18305320IPR00604411-S seed storage protein, plant
PRINTSPR004393.2E-18323341IPR00604411-S seed storage protein, plant
PRINTSPR004393.2E-18345355IPR00604411-S seed storage protein, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0045735Molecular Functionnutrient reservoir activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVLSSKLATS DAGLDWSQEL LDKGGLLQVP QPMSQARNNQ QQKQHWPPLK CPRCDSTNTK  60
FCYYNNYSRT QPRHFCKACR RHWTEGGTLR NVPVGGGRKN KRSKATPAAT NTTSTTAPGA  120
AVPLLFGGDH SSNIFPEILR QVLLRQPPPP LPQLQLAPSD YSFSSPFSSD PHSKPTLANS  180
SDGNNNTPFP ISSSYSYPLA SVSEECLATI NPCSTASAWQ VGQVTAALPR SIGGMDHSST  240
DYWSGWDDEM AGFSAVRGLL CLNAISSPHW NVNTHIIVYA LRGCSRVQVV GHRGRTVFDG  300
ELRQVHLLVV LYYFAVMFQA QNESFEWVTM KTNDNVMVSH FTGKVSALRS IPVEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wpw_A1e-2525335528638811S globulin isoform 1
5wpw_B1e-2525335528638811S globulin isoform 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400291.11e-148PREDICTED: dof zinc finger protein DOF1.7-like
TrEMBLM0SXT00.0M0SXT0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P12010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.16e-30TARGET OF MONOPTEROS 6