PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P12850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 211aa    MW: 23816.8 Da    PI: 9.1147
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P12850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12e-10871305798
                            TEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                     B3  57 gryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                            ++yv+tkGW++Fvk++ L +gD+v F +  g+  + +l++ + r
  GSMUA_Achr5P12850_001  87 QSYVMTKGWSRFVKEKTLGAGDTVSFGRGvGDaARHRLYIDWKR 130
                            78************************955466666667766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-95586IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-1459133IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-1060112No hitNo description
PfamPF023621.2E-786131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-987133IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEFLLERKES FYITDKEEES SKQPPFNPPS SSPSLASTAF KWHDSSSGGG GDFSFMEKEH  60
MFDKVVTPSD VGKLNRLVIP KQHAENQSYV MTKGWSRFVK EKTLGAGDTV SFGRGVGDAA  120
RHRLYIDWKR RPERLPLVHD HAAVKRVRLF GVNLDCPDRG DDANYHRSVR QLHPTTALPF  180
LQPLRAESQT LLASSSSQMS NQQRSPLDLC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-31571333115B3 domain-containing transcription factor NGA1
5os9_B4e-31571333115B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104913e-33AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
GenBankAC2175823e-33AC217582.2 Oryza punctata clone OP__Ba0071K23, complete sequence.
GenBankAC2260773e-33AC226077.2 Oryza minuta clone OM__Ba0121K01, complete sequence.
GenBankAC2365463e-33AC236546.1 Oryza minuta clone OM__Ba0198F03, complete sequence.
GenBankCP0126113e-33CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8332963e-33CT833296.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA019E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400586.15e-60PREDICTED: B3 domain-containing protein Os03g0120900-like
TrEMBLM0SY141e-156M0SY14_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P12850_0011e-157(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.15e-33B3 family protein