PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P15160_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 292aa MW: 32522.4 Da PI: 10.1534

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P15160_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	39	98	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk+k++ GSMUA_Achr5P15160_001 39 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKSKRA 98 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-25	36	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-33	41	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.115	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MDANQWPEEF ASSTITTTSS STCTTTRPQA TERRPRPQKE QALNCPRCNS TNTKFCYYNN 60 YSLTQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKSKRASI SSAATTNSSS ITAAIATASA 120 PKKIHADLIP PYISLSTTSE ALKFHEGQDL NLAFRQQSLR HGMTARGLGP FMPMLMPMPE 180 YPTGFGLQEF RPPTLNFPLH GIGGKVVILK GSGMVSLEEA HGRTKRSQGE QPSKITRTQE 240 CIFFSISILD GIAGSLCLQL LRPHIRQMIH KLRLFSFISF LDTFWLLITV DM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN977016	2e-47	JN977016.1 Molineria latifolia clone CL27 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400876.1	1e-101	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	9e-43	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	M0SYP5	0.0	M0SYP5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P15160_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-33	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]