PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P15450_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 277aa MW: 29848.4 Da PI: 7.0275

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P15450_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.0004	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C ++Fs+ L H+r+H GSMUA_Achr5P15450_001 4 HACKLCVRRFSNGRALAGHMRSH 26 67********************9 PP
2	zf-C2H2	10.9	0.0015	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H GSMUA_Achr5P15450_001 160 YQCGACKKVFRSYQALGGHRANH 182 9***********99999998887 PP
3	zf-C2H2	10.8	0.0015	211	233	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H GSMUA_Achr5P15450_001 211 HECPFCFRVFSSGQALGGHKRSH 233 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.452	4	26	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.2E-4	4	26	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.04	4	26	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	9.83E-8	4	26	No hit	No description
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.83E-8	155	182	No hit	No description
Pfam	PF13912	1.1E-9	160	184	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.265	160	187	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.3	160	182	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	162	182	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.89E-5	209	238	No hit	No description
Pfam	PF13912	1.3E-9	210	233	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.93	211	238	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	211	233	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	213	233	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDKHACKLCV RRFSNGRALA GHMRSHVIFA AGPPALPQLH RDSSASVSSD RPAATQEVVD 60 EFSSSSSFAA VEPAGSGVVV QDLESETESP RGHRRRAKRL RRDAASPLDP EPASSVSDAT 120 PEEDVALCLM MLSRDSWADG VEEEVDPRPR PPPRRGRSRY QCGACKKVFR SYQALGGHRA 180 NHKKTNGCVP AVELRTCEAD SADTNLDVKV HECPFCFRVF SSGQALGGHK RSHFITSPPT 240 SAGSIGLIDL NMPAPTDDDV ELSAISGMDF VANPTTN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400908.1	1e-162	PREDICTED: zinc finger protein ZAT4-like
TrEMBL	M0SYS4	0.0	M0SYS4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P15450_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11214	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-46	C2H2-like zinc finger protein