PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P15900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 547aa    MW: 60123.3 Da    PI: 4.4843
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P15900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.4e-33781702103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+ye+++d++l+ ++sw   g+sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g
  GSMUA_Achr5P15900_001  78 FLSKTYELVDDPALDAVLSWAPAGRSFVVWDPVEFARVVLPRHFKHNNFSSFVRQLNTYGFHKIDADR---------WEFANEDFLQG 156
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            ++ ll++i+r++s+
  GSMUA_Achr5P15900_001 157 NRVLLKNINRRRSS 170
                            ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-5574167IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3374167IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-3675167IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-2978167IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-1878101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-18116128IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340117141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-18129141IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MDFGGRSASN SSQSPRLRPK MEPPGEPSRL SPPSPSVSPL PDSAAAAPSA LQPDGGGGGG  60
EGVPRPLEAL QSSPIPPFLS KTYELVDDPA LDAVLSWAPA GRSFVVWDPV EFARVVLPRH  120
FKHNNFSSFV RQLNTYGFHK IDADRWEFAN EDFLQGNRVL LKNINRRRSS QVHQIAMQVS  180
LSAEPENSGL EGEIHMLKSD RSALMQEIMR LQQEHLITVK QMDMLKLQMQ SAEQRQKQMV  240
SFLAKVIRNP VFLVHLRQQQ EQSGIASPRV IRKFLKQKPS SNTDAIGSID QGAKNMLGFE  300
VVAASTLQDP EHVVNKEIPD ILPDFVEKLG LHASGEELIE GLDEAEVDAL APLFLDAATV  360
SSMAKNPESH QSQIQLSITP AECFSSFSQG VETERTSFSA TVPPSESMTQ DLVSLVLRGK  420
NTVSYTLDAT YGASEDLISF PEDASEEKMR DKGPARDITI DQEEVWEAVT EAGQQSFGCE  480
GNVWEDFVHD PSVLGFAAGL DVPWDPVLHV LDGNLEFDKW DNAGLCLQES GDQSASLKND  540
NPENMQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-255916710129Heat shock factor protein 1
5d5v_B3e-255916710129Heat shock factor protein 1
5d5v_D3e-255916710129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401013.10.0PREDICTED: heat stress transcription factor A-2b-like isoform X1
TrEMBLM0SYW90.0M0SYW9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P15900_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-76heat shock transcription factor A3