PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P16260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 210aa    MW: 23422.2 Da    PI: 4.3302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P16260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.1e-14122208797
                            .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                     B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                            + +++++++l lp      h+ +  e k+++l+d+sgrsW v +    + + + + +GW+eF+ an+L++g  + F ++    + ++ 
  GSMUA_Achr5P16260_001 122 TLSSSNRCQLALPLGIP-FHMRQ--ERKDIILRDPSGRSWPVLY--HESNQFIGFLNGWEEFATANNLQQGNLCEFFVVTGaPDPTFQ 204
                            56777888888888875.67666..4468***************..99999999999*****************99877444777777 PP

                            EEEE CS
                     B3  94 vkvf 97 
                            v+++
  GSMUA_Achr5P16260_001 205 VQIR 208
                            7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-16116208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.871116210IPR003340B3 DNA binding domain
CDDcd100174.81E-15117208No hitNo description
Gene3DG3DSA:2.40.330.102.2E-15117208IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0018119209IPR003340B3 DNA binding domain
PfamPF023628.9E-12121208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSNDASCHLQ SVPEVNFHGP ATYSIETSNG MRTYEENGNA PGFLSGKDFS KLDGSVRSIL  60
QDVPGIDTPQ GNSIRYGMML DALPVEDEDA VCMRSQNLEP VEVDNMDLDD LSLANSFCFR  120
LTLSSSNRCQ LALPLGIPFH MRQERKDIIL RDPSGRSWPV LYHESNQFIG FLNGWEEFAT  180
ANNLQQGNLC EFFVVTGAPD PTFQVQIRHT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681483.11e-152PREDICTED: uncharacterized protein LOC103985153 isoform X3
RefseqXP_018681484.11e-152PREDICTED: uncharacterized protein LOC103985153 isoform X4
TrEMBLM0SZ051e-156M0SZ05_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P16260_0011e-156(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.16e-07B3 family protein