PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P17240_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 218aa MW: 24772.6 Da PI: 9.6848

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P17240_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.4	1.5e-26	77	158	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rre++ ++++k++ +lWe++s kmre+gf rsp++C++kw+nl k++kk k++ k+ s+s+ +++y+++l+ GSMUA_Achr5P17240_001 77 WIQEETKSLIALRREIDGLFNTSKSNRHLWEQISTKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQIKG--SGSV-KMSYYKELD 158 ***************************************************************9998..4555.89***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-5	68	138	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.525	69	133	IPR017877	Myb-like domain
SMART	SM00717	0.0075	73	135	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.49E-5	74	141	IPR009057	Homeodomain-like
CDD	cd12203	6.69E-28	75	140	No hit	No description
Pfam	PF13837	8.7E-22	76	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSLLTLDQFL SRSLHSRANI IGEDAAVATA RRMYSTEKPC GVDFYNGGLP PPPQMILAES 60 SGEDHEVRAP KKRAETWIQE ETKSLIALRR EIDGLFNTSK SNRHLWEQIS TKMREKGFDR 120 SPTMCTDKWR NLLKEFKKAK HQIKGSGSVK MSYYKELDEL LKERSKKAGF KSSAASKVDA 180 YLHFPDKGLE DANIPLGPVE GIKKLYSCAI FFCMVIFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	5e-49	71	156	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401153.1	1e-144	PREDICTED: trihelix transcription factor GT-1-like isoform X1
Refseq	XP_009401154.1	1e-145	PREDICTED: trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	5e-70	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	M0SZA3	1e-162	M0SZA3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P17240_001	1e-162	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	1e-70	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]