PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P17390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 671aa    MW: 73532.8 Da    PI: 6.1127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P17390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000494785151355
                            HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            R+ i +++ eLre++P+ a      K s  + Lek+++++  Lq
  GSMUA_Achr5P17390_001 478 RQMIQDRIKELREIVPNgA------KCSIDALLEKTIKHMLFLQ 515
                            77899************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-345176IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.652465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-4478520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MGLPLREALR QLCLEFGWSY AVFWSATGFG SGMHLTWEDG YCDRKLGVSK LQVSDLLLKE  60
HAVVESTEDN CFSERGCQAD DRIVDLVDKI MASQVHIVGD GLTGQAASVG KHLWIHKDTL  120
DGFGSTSKGF ADINCQIVAG IQTIVVVPVL PVGVIQLGST QMVLENIDFI NHVKNLVLKL  180
NCGLGAHPSD NTQKTLRQKS QMYSSLGPLF DCRSTTACTT VDNILPITAN GFSHELISAS  240
EIMSGKQNVN TTTHTIGELF MHGTQDISPK PDIECTQQVM PVNTGSKCQN EPSVSNLFLL  300
VNYKVNGICP GESRQCVQDL DECKLLYTSK DASPFPVDFT SSSDLFDSSS NQILYSGLFS  360
IDDSDQLLDA VISKINSGAK HSSEDSTSCK TSLSNVHSSH YAGNPSHGES SCNLEKDGDY  420
SQKIGLHKSL ISSWVENCQN VKYDCVSDSN SKKVAEVGKL SRKRPRPDES PRPRPKDRQM  480
IQDRIKELRE IVPNGAKCSI DALLEKTIKH MLFLQSVTKH ADKLKVAGEP KISGEEGGLL  540
LKDNFDGGAT WAFEVGTQPM ICPIIVEDLN PPRQLLVEML CEERGFFLEI ADFIRGLGLT  600
ILKGVMEARK RKVWARFAVE ANRDVTRMEI FVSLMQLLQP TASSSTGPPS VGNINMPHAV  660
LHQTSIPAQV L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1462466KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401172.10.0PREDICTED: transcription factor LHW isoform X1
RefseqXP_009401173.10.0PREDICTED: transcription factor LHW isoform X2
TrEMBLM0SZB80.0M0SZB8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P17390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.19e-45conserved peptide upstream open reading frame 7