PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P17900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 282aa    MW: 31457.1 Da    PI: 8.2307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P17900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-1284135155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+++N+ ++ Lr+l+P +   +  + + a++   A++++k+L+
  GSMUA_Achr5P17900_001  84 QRMTHIAVERNRRKQMNQYLAVLRSLIPAS---YLHRGDQASVIGGAINFVKELE 135
                            79***************************9...9999999***999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.58E-1282139No hitNo description
Gene3DG3DSA:4.10.280.102.0E-1382139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.37383134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1683155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-984135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-889140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MALQAVVFQQ DLFGCNMREM HIKGGEIRGV LSQCDVSGAQ GGRNLSLPEM GTDSASVVCT  60
GTAAGRRKRR RTRSCKNQEE VENQRMTHIA VERNRRKQMN QYLAVLRSLI PASYLHRGDQ  120
ASVIGGAINF VKELEQLVQS LEARKRIKQR SNSAPFANFF TFPQYSTRNA DEAAAEQQSP  180
VADIEVTMVE SHANLKVLAQ RRPKQLLKMV VGLHLLHLTT LHLNVTTIDA MVLYSFSLKM  240
EDECHFTCVD EIAAEVHQMV GKIQEEAASD SAVCLCSNHN IM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670RKRRR
26671RKRRRT
38495RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401227.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T49e-75BH096_ARATH; Transcription factor bHLH96
TrEMBLM0SZG90.0M0SZG9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P17900_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]