PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P18100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 489aa    MW: 53741.6 Da    PI: 7.5806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P18100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.6e-06332359430
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.a 30 
                            +h e+Er+RR+++N++f  Lr +l + +
  GSMUA_Achr5P18100_001 332 NHVEAERQRREKLNQRFYALRAVLRSkL 359
                            799*******************998855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-4063214IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508888.715328386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.76E-6331384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-5331366No hitNo description
Gene3DG3DSA:4.10.280.106.7E-6331363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MNLWADDNAS MMEAFTDLQG FPWAATPTPS TPPLPTALDP GRALIGPPTP APPPTAYFNQ  60
ETLQQRLQTL IDGAGENWTY GIFWQSSVDA ASGASFLGWG DGYYKGCEED KRKQRAASAA  120
SAAEQEHRKR WFFLVSMTQS FVNGDGLPGQ ALYAGAPSWV AGCDRLAAAP CERARQAQLF  180
GIQTMVCYPV GSGVLELGST DVILHSPEIM GKISDSIQKA LYGHQQQIHH PQHQSSGSKP  240
QSQPFFSKEL NFSGFASNGS GMLSFSSAPT RPPSNSQLKS SCGGGVLDGA DSDQSDLEAS  300
VREVESIRVV EPEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVLRSKLQ  360
ASEADKEELQ SQMEIIKKER ESAPARPAPP PRYDVKMMKG CHGVEIDVKL LGSEAMIRLQ  420
SQKRNHPAAR LMAALQDLDL EVHYASVSVV KDLMIQQATV QMSSRVYTQE QLNAALYSRL  480
VAETPPFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-46582154190Transcription factor MYC3
4rqw_B6e-46582154190Transcription factor MYC3
4rs9_A6e-46582154190Transcription factor MYC3
4yz6_A6e-46582154190Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313321KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094338.10.0LOW QUALITY PROTEIN: transcription factor MYC2-like
SwissprotA0A060KY901e-141MYC1_SOLLC; Transcription factor MYC1
TrEMBLM0SZI90.0M0SZI9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P18100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.17e-49bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Xu J, et al.
    SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells.
    Plant Cell, 2018. 30(12): p. 2988-3005
    [PMID:30518626]