PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P19060_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 244aa MW: 28184.7 Da PI: 6.6856

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P19060_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.2	4.3e-46	11	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPt+e+l+++yL++ ++g++ ++ ++i +diy+++Pw+Lp +k +e+ewyfF++r++k+++g r++r t+ g+Wkatg+d+ GSMUA_Achr5P19060_001 11 PGFRFHPTEEQLLDFYLRRVATGESASF-DIIGVLDIYRHDPWELPGLAKIGEREWYFFVPRERKSRSGGRPSRRTEGGFWKATGSDR 97 9*********************9888.99***********8888899******************************* PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ s+ ++++glkktLvfy+grap+g++tdW+m+eyrl GSMUA_Achr5P19060_001 98 TIRSAaePRRVIGLKKTLVFYRGRAPRGTRTDWIMNEYRL 137 98766778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.363	9	160	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-56	10	160	IPR003441	NAC domain
Pfam	PF02365	1.3E-23	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MERTVLGFEL PGFRFHPTEE QLLDFYLRRV ATGESASFDI IGVLDIYRHD PWELPGLAKI 60 GEREWYFFVP RERKSRSGGR PSRRTEGGFW KATGSDRTIR SAAEPRRVIG LKKTLVFYRG 120 RAPRGTRTDW IMNEYRLQED CTSAGVPLVE HMVLCKVYRK ATSLKELEQR AAKEEDTKAC 180 NSDQDNYHSP SNPLDSGELK ETKEEVVKEV EVSSSSAGVE WMQEPFITQP WMDHWSPYAN 240 TLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-49	11	166	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-49	11	166	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-49	11	166	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-49	11	166	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-49	11	166	22	174	NAC domain-containing protein 19
3swm_B	3e-49	11	166	22	174	NAC domain-containing protein 19
3swm_C	3e-49	11	166	22	174	NAC domain-containing protein 19
3swm_D	3e-49	11	166	22	174	NAC domain-containing protein 19
3swp_A	3e-49	11	166	22	174	NAC domain-containing protein 19
3swp_B	3e-49	11	166	22	174	NAC domain-containing protein 19
3swp_C	3e-49	11	166	22	174	NAC domain-containing protein 19
3swp_D	3e-49	11	166	22	174	NAC domain-containing protein 19
4dul_A	3e-49	11	166	19	171	NAC domain-containing protein 19
4dul_B	3e-49	11	166	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401884.1	0.0	PREDICTED: NAC domain-containing protein 35-like isoform X1
Swissprot	Q10S65	4e-90	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M0SZT5	0.0	M0SZT5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P19060_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	9e-73	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]