PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P19950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 660aa    MW: 73578.5 Da    PI: 7.9768
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P19950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.81.1e-31151235187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW++qe+laL+++r+em+ ++r++  k+plWeevs+k++e g++rs+k+Ckek+en++k+yk++k+g+ +r  ++ +t+++f+qlea
  GSMUA_Achr5P19950_001 151 RWPRQETLALLKIRSEMDAAFRDATFKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKDGRAGR--QDGKTYRFFNQLEA 235
                            8********************************************************************98..56667*******85 PP
2trihelix106.81.5e-33397482187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k+ev+aLi++r+ +++r++++  k+plWe++s+ m++ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s++cpyf++lea
  GSMUA_Achr5P19950_001 397 RWPKEEVHALIKLRSGLGSRYQEAGPKGPLWEDISAGMHRLGYNRSAKRCKEKWENINKYFKKVKDSNKKR-PEDSKSCPYFHELEA 482
                            8*********************************************************************8.999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0026148210IPR001005SANT/Myb domain
CDDcd122031.16E-28150215No hitNo description
PROSITE profilePS500906.888150208IPR017877Myb-like domain
PfamPF138372.1E-21150236No hitNo description
PROSITE profilePS500908.095390454IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-5394453IPR009057Homeodomain-like
SMARTSM007176.2E-4394456IPR001005SANT/Myb domain
SuperFamilySSF466898.65E-5395456IPR009057Homeodomain-like
CDDcd122038.35E-30396461No hitNo description
PfamPF138371.0E-22396483No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MFCHFPSPSS SSSSIFSSAT STLTSFLYYS FLVTYHLCIS YIWCFSSLFL GFFFALPTPS  60
LCLFSRPFFL FCKLSFLLFS LHVLIPAIPT ASTSSSLSLA PLREGQRGRG SSVGNTTNFD  120
ELAPAVAGGF HDDEALTVGY EAERGGTPGS RWPRQETLAL LKIRSEMDAA FRDATFKGPL  180
WEEVSRKLAE LGYKRSAKKC KEKFENVHKY YKRTKDGRAG RQDGKTYRFF NQLEALHSSA  240
SPPPRRAPQL LESKLRLSPP RPHRPFSSDS TSSSSQQMMT FFQGLMRQVM ERQEAMQQRF  300
LEAIEKREQD RLIREDAWRL QEMARLSREQ ELLSQERAMA ASRDTAVISY LQKISGQPVT  360
SSSAVPASAA AISLTPLPLP PSEPEEGHCF EPVSSSRWPK EEVHALIKLR SGLGSRYQEA  420
GPKGPLWEDI SAGMHRLGYN RSAKRCKEKW ENINKYFKKV KDSNKKRPED SKSCPYFHEL  480
EALYRKKTLG SDIAAGDPGG GSSAVGQQKQ EQDTNPSPLG QQQQRHPAVA EGQNGDNNKN  540
NRSGGNPEAG GGSTVVQVQT RNGQQPPSFP DQEGTMKPED VVKVPTEQRH PPAVMDEHYK  600
MDKPSSDNLD QDDDYEDEDD EDEVQYKLQF QRQIPSGDTA IATTAAATAT ASGTFLAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193201KRSAKKCKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401788.20.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
TrEMBLM0T0240.0M0T024_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P19950_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-67Trihelix family protein