PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P19980_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 266aa MW: 28523.6 Da PI: 8.6589

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P19980_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.1e-40	62	121	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks GSMUA_Achr5P19980_001 62 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKS 121 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	58	120	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.9E-34	64	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSNYWSAWGC GFVALQEIGL AKPMQLVPSA SSSPSTTTTT ASNTCSTAMS QVVTERRARP 60 QKEQALNCPR CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW TEGGSLRNVP VGGGSRKNKK 120 SFLSTAATTA TSSTATAASA LVSNPKKLPT EHVSPPFSLS TSRKFHEGQD LNMAFPHPGL 180 PEYNDFPSLE SSTVNNNSST SSGSSGGYGA LQGMQESAHG RLVFPFEDVK PGVADTSTTP 240 ELENSREEGV ATPGFWNGMF GGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN977016	2e-53	JN977016.1 Molineria latifolia clone CL27 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018681521.1	1e-95	PREDICTED: dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q9SXG8	1e-44	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	M0T027	0.0	M0T027_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P19980_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-40	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]