PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P20170_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRF

Protein Properties

Length: 171aa MW: 18447.4 Da PI: 9.8592

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P20170_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	84.1	1.2e-26	90	134	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e+ GSMUA_Achr5P20170_001 90 EPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRNRSRKPVEA 134 69****************************************985 PP
2	QLQ	58.1	2.6e-20	27	60	4	37
QLQ 4 TaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 T +Qlq+L++Q+l+yKy+aa++PvP +L+++i+k GSMUA_Achr5P20170_001 27 TFMQLQELEHQALIYKYMAAGLPVPVHLVLPIWK 60 789******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.9E-7	24	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.481	25	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.4E-14	27	59	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.499	90	134	IPR014977	WRC domain
Pfam	PF08879	5.2E-23	91	133	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MAAPSPLMLG LGLGLGTGPG ASKPVITFMQ LQELEHQALI YKYMAAGLPV PVHLVLPIWK 60 SVAASSFGAY HYPSLMGYGS LCLDYRNSME PEPGRCRRTD GKKWRCSRDV VPDQKYCERH 120 MHRGRNRSRK PVEAAATSAA AASTPPSCPS RSRLVGGFCR PPTPPAAAAE P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009402070.1	1e-123	PREDICTED: growth-regulating factor 10-like
Swissprot	Q6EPP9	2e-63	GRF10_ORYSJ; Growth-regulating factor 10
TrEMBL	M0T046	1e-122	M0T046_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P20170_001	1e-122	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6221	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-38	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]