PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P20340_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Protein Properties

Length: 337aa MW: 37096.2 Da PI: 8.8339

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P20340_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	93.5	1.5e-29	83	174	1	87
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kv tpsdv+k++rlv+pk++ae++ + + ++ l++ed++g+sW+++++y+ +s++yv+tkGW++Fvk+++L +gD+v F + GSMUA_Achr5P20340_001 83 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAEAHGKGLLLSFEDRNGESWRFRYSYWSSSQSYVMTKGWSRFVKEKRLVSGDTVSFGR 170 89***********************999666678999*********************************************95 PP -.SS CS B3 85 d.gr 87 g+ GSMUA_Achr5P20340_001 171 GvGE 174 4344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.0E-41	73	191	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.7E-28	80	187	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.34E-19	81	168	No hit	No description
Pfam	PF02362	2.7E-26	83	177	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-20	83	188	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.761	83	186	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MYYCTTKISP SFCKGDLKMA FAHGRDMFDF TEQEEAWKHA PFLLSSSSTS SPSSSSAPFR 60 WNDGSSSSSR RGDDSFIEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDAEAHGKGL 120 LLSFEDRNGE SWRFRYSYWS SSQSYVMTKG WSRFVKEKRL VSGDTVSFGR GVGESGRDLL 180 YIDWKRRPEN HGATRASRIS FHGASFAQSA GPWGGHLFMP RPPPPPPATV YDHHRLGYGY 240 NLQPGGGGGS PMAHDSVSVV HSQATAKNVR LFGVNLVCTG TESKANGSNQ GASFSCLRSQ 300 EASTLPLLQF QHSSAESSLV SSSSTSKEQH SSLDLDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	9e-58	78	189	3	115	B3 domain-containing transcription factor NGA1
5os9_B	9e-58	78	189	3	115	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC105363	2e-90	AC105363.2 Oryza sativa Japonica Group chromosome 3 clone OJ1705B08, complete sequence.
GenBank	AC210491	2e-90	AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
GenBank	AP014959	2e-90	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	2e-90	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBank	CT833296	2e-90	CT833296.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA019E02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401740.1	0.0	PREDICTED: B3 domain-containing protein Os02g0683500-like
Swissprot	Q6EU30	8e-71	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBL	M0T063	0.0	M0T063_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P20340_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	4e-44	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]