PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P20600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 588aa    MW: 66353.3 Da    PI: 5.245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P20600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12391436555
                            HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            h   ErrRR++++++f  Lr+l+P+ +      K++Ka++L  +++Y+k+L+
  GSMUA_Achr5P20600_001 391 HVLSERRRREKLKEKFLVLRSLIPSiS------KVDKASVLGNTIDYLKDLE 436
                            7789*********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-4114169IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.044386435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16389455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-12389439No hitNo description
Gene3DG3DSA:4.10.280.108.4E-16390452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9391436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-14392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MQFVGNAIHI DIIKSVLEWC GGFYNGQIKT RKMIQPIELE ADQMSLQRSE QLRELYESLS  60
SGDSNQQMRR ACAALYPEDL TDAEWYYLTC MSFVFNIGQG LPGKAFADNQ HIWLNGAQFA  120
NCKMFSRSLL AKSASIQTVV CIPIMDGVLE LGTNDLILED PAIIEKITSS PWELPNPICS  180
EQSISGRRMA ENDEDHLCPN LDNNIDDCID LEDQNLIVDP QTQLGNGSSD GSLNDGCPTQ  240
KVEDAFGVDG LNDISQTQSR QFIDDEFSNV LHGYLDCDVH EPMSFRSLSR IVPLDLDGDD  300
SHSAKTVAVI LQNSKHVKPV SSYPKISHKS SFATWRIDMN PPKPFTSMSQ KLLKKLLVDI  360
TWLHDGRLQR HQENGMQEKT CKPEGESDVR HVLSERRRRE KLKEKFLVLR SLIPSISKVD  420
KASVLGNTID YLKDLERRVL ELESSQEPAE LEIAESRKHP DVAKRSSENY RNKEIVNGEN  480
SLAKKRKVSD VDRSNAEHLW ILTKDRPIEV NVTLKDKEVL VEMHCPWRES LVFEIVESIS  540
NLHLDLLSVQ SSTVDGMLSL AIKSKFRSTS VASPGMIKQS LQRVMGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A8e-127816799188Transcription factor MYC3
5t0q_A8e-127816799188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394399ERRRRE
2395400RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918535.10.0transcription factor GLABRA 3
TrEMBLM0T0890.0M0T089_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P20600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-100bHLH family protein