PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P20930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 219aa    MW: 23452.4 Da    PI: 8.8745
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P20930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17123157135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  GSMUA_Achr5P20930_001 123 CMHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 157
                            99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.1E-15117167IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.147121153IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-13121155IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.57E-14121181No hitNo description
CDDcd002021.27E-12122167No hitNo description
PfamPF003202.9E-15123157IPR000679Zinc finger, GATA-type
PROSITE patternPS003440123148IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRTPASSYSA SLVTVAPQQD AAAPAYPYGL PPAVDALRVT DVLDFSGRDL FPSAFGADTQ  60
FFTVGGTAET DSSFDLYVPV STSTKNTQST SFCSLSLCLD FNGGSRGKKS GWGVGAEGGV  120
RRCMHCASEK TPQWRTGPLG PKTLCNACGV RYKSGRLLPE YRPAASPAFV LTQHSNSHRK  180
VMEIRRQKEL LLRHHKNQPP ASAAAAANRP ELLDGNDVC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693002e-65AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence.
GenBankAK2422922e-65AK242292.1 Oryza sativa Japonica Group cDNA, clone: J075191F19, full insert sequence.
GenBankAP0149662e-65AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-65CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankCT8378192e-65CT837819.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN064N24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402051.24e-67PREDICTED: GATA transcription factor 2-like
TrEMBLM0T0C21e-161M0T0C2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P20930_0011e-162(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.19e-46GATA transcription factor 2