PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P21200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CAMTA
Protein Properties Length: 147aa    MW: 17380.8 Da    PI: 9.2936
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P21200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1147.92.6e-46321334105
                   CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                             ++rw +++e++aiL n++ ++++ ++ ++p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+hekLK+g+ + +++yYa+se +
  GSMUA_Achr5P21200_001  32 ASTRWFRPNEVHAILSNYTLFKIQPQPIDNPTSGRVLLFDRKMLRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEDRIHVYYARSEYD 119
                            489************************************************************************************* PP

                   CG-1  92 ptfqrrcywlLeee 105
                            p+f rrcywlL++ 
  GSMUA_Achr5P21200_001 120 PNFYRRCYWLLDKY 133
                            ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143759.88325147IPR005559CG-1 DNA-binding domain
SMARTSM010768.4E-4928144IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4032133IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEAGDSGLLA GAEIHGFRTV ADLDIEKLFE DASTRWFRPN EVHAILSNYT LFKIQPQPID  60
NPTSGRVLLF DRKMLRNFRK DGHNWKKKKD GKTVQEAHEK LKIGNEDRIH VYYARSEYDP  120
NFYRRCYWLL DKYVLFMSIF LNFAFGQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401636.16e-90PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_009401637.16e-90PREDICTED: calmodulin-binding transcription activator 5-like isoform X2
SwissprotQ7XHR25e-62CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLM0T0E91e-106M0T0E9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P21200_0011e-107(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1983834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.13e-59calmodulin binding;transcription regulators