PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P21440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 707aa    MW: 76448.9 Da    PI: 6.2969
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P21440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.71.6e-953476142285
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lLl+cAeav++++le+a++lL ++sel++p g++ qR+aayf eA++arl++s+ +ly+ lp+ + +     + ++a+++f+ +sP
  GSMUA_Achr5P21440_001 347 LTLLLHCAEAVAADNLEEANRLLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGLYAPLPTVPHR----HRLASAFQVFNGISP 430
                            579************************************************************999997....788999********* PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                            ++kfsh+taNqaI ea+e+e+rvHiiDfdi+qGlQWp L++ LasRp+gpp++R+Tg+gs    s ++le+tg+rL++fAe+lg+pfe
  GSMUA_Achr5P21440_001 431 FVKFSHFTANQAIQEAFEREDRVHIIDFDIMQGLQWPGLFHILASRPGGPPRVRLTGLGS----SMDALEATGKRLSDFAETLGLPFE 514
                            ************************************************************....************************ PP

                   GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                            f + va+++ +l++e+L v+++EalaV++ +  h+l+d ++s ++    +L+l+++l Pk+v++veq+++  ++sFl+rf+ea++yys
  GSMUA_Achr5P21440_001 515 FVP-VAEKVGNLDPERLGVSRREALAVHWLH--HSLYDVTGSDTN----TLWLLQRLAPKIVTMVEQDLSQ-AGSFLARFVEAIHYYS 594
                            ***.7*************************9..999999999999....********************98.899************* PP

                   GRAS 266 alfdsleaklpreseerikv 285
                            alfdsl a+++++s+er+ v
  GSMUA_Achr5P21440_001 595 ALFDSLGASYGEDSQERHIV 614
                            *****************986 PP
2GRAS59.76e-19615678311374
                   GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            ++++Wre+l+++GF+ v+l  +aa+qa lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  GSMUA_Achr5P21440_001 615 KFSNWREKLSQSGFRGVSLAGNAAAQATLLLGMFPSDGYTLVEENGTLKLGWKDLCLLTASAWR 678
                            6899***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.196320705IPR005202Transcription factor GRAS
PfamPF035145.7E-93347614IPR005202Transcription factor GRAS
PfamPF035142.1E-16615678IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MASTSFLLFP PPAHDSSPSS ADQPNSNCSS SSSSSLIRAN SSPLPPLQPL LLLPPQQFHY  60
FRQQQHQQEE QLLQLLYLQQ QQQQQQQQQE EQDKMVRKRL ASELDLQSDS PYGPARLSRR  120
TTTGASSSSS ANPTFLGDVL PGQPSPLFNP PSTLPVDVGQ QSAAASLVSA SAIGGGGGSS  180
DDAGVGTAWV DGIIRDIINS SAGGEVSIPQ IVNSVREIVH PCNPGLAALL EFRLQSLSSD  240
PSPAAALHSL PNSAALDPSD KRRRDTRVAP PLPETVQAPK RANQAPPFTF APAQPQPQPQ  300
PQRSSTSVSS DEATAATAAA SAAAAAAARK REEMQQRKRD EEGLHLLTLL LHCAEAVAAD  360
NLEEANRLLL EISELSTPFG TSAQRVAAYF SEAMSARLVS SCLGLYAPLP TVPHRHRLAS  420
AFQVFNGISP FVKFSHFTAN QAIQEAFERE DRVHIIDFDI MQGLQWPGLF HILASRPGGP  480
PRVRLTGLGS SMDALEATGK RLSDFAETLG LPFEFVPVAE KVGNLDPERL GVSRREALAV  540
HWLHHSLYDV TGSDTNTLWL LQRLAPKIVT MVEQDLSQAG SFLARFVEAI HYYSALFDSL  600
GASYGEDSQE RHIVKFSNWR EKLSQSGFRG VSLAGNAAAQ ATLLLGMFPS DGYTLVEENG  660
TLKLGWKDLC LLTASAWRPI NHHQAAATST LWSMTKTIGA KMDLNFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03306793380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401608.10.0PREDICTED: protein SCARECROW 2-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLM0T0H30.0M0T0H3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P21440_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein