PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P21840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 207aa    MW: 23511.2 Da    PI: 8.6734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P21840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-131462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eE  +l+ +++++G g  W + ++++g++R++k+c++rw++yl
  GSMUA_Achr5P21840_001 14 KGAWSPEEAAKLKAYIEEHGIGaYWLSLPHKIGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding36.79.8e-1269111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eEd+ +  +    G++ W+ Ia+ +  gRt++++k++w++
  GSMUA_Achr5P21840_001  69 GGFSEEEDQVICSLYISIGSR-WSMIAAQLL-GRTDNDVKNHWNT 111
                            569******************.********9.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.291962IPR017930Myb domain
SuperFamilySSF466896.94E-2311109IPR009057Homeodomain-like
SMARTSM007171.5E-61364IPR001005SANT/Myb domain
PfamPF002491.5E-111462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-201569IPR009057Homeodomain-like
CDDcd001671.34E-71662No hitNo description
PROSITE profilePS5129419.80163117IPR017930Myb domain
SMARTSM007172.3E-967115IPR001005SANT/Myb domain
PfamPF002492.1E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2170117IPR009057Homeodomain-like
CDDcd001679.86E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGAWSPE EAAKLKAYIE EHGIGAYWLS LPHKIGLKRC GKSCRLRWLN  60
YLRHNIKHGG FSEEEDQVIC SLYISIGSRW SMIAAQLLGR TDNDVKNHWN TRLKKKLLGM  120
QTEPSQSPCL PAQTLSASAL QRMQLLYAFF LSNIPALGGK LLETSHQTLP QMEQEIQISM  180
SQIVQEDMDC SWHGVHPLQY LMMETRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402038.11e-155PREDICTED: transcription factor RAX3-like
SwissprotQ9FKL26e-72MYB36_ARATH; Transcription factor MYB36
TrEMBLM0T0K91e-153M0T0K9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P21840_0011e-154(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-74myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]