PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P21990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 433aa    MW: 48331.1 Da    PI: 9.4569
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P21990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.2e-41158234278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            CqvegC++dl++ak+yhr+hkvCe hsk+p+v+vsg+e+rfCqqCsrfh lsefD++krsCrrrL++hn+rrrk+++
  GSMUA_Achr5P21990_001 158 CQVEGCNVDLTSAKDYHRKHKVCESHSKSPEVIVSGQERRFCQQCSRFHVLSEFDQKKRSCRRRLSDHNARRRKPHP 234
                            **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-33150219IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.47155232IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-39157237IPR004333Transcription factor, SBP-box
PfamPF031106.6E-32158231IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDWTLKTPLH WDWETLTLFS KKDAEISKSA HQPDWKFAGG QLGYGSSRSS ISVSVGSTSK  60
DISRTPQFNF DSVEQSPENL KKNKDLARVE TGIMHRVVAS DGPEKPLICL KLGKRTHLKD  120
VSEGNNNKNP SSLSSTNLST GLIKKPKVSQ QHMQNSYCQV EGCNVDLTSA KDYHRKHKVC  180
ESHSKSPEVI VSGQERRFCQ QCSRFHVLSE FDQKKRSCRR RLSDHNARRR KPHPETIPFT  240
SSMFPASYYG GRQQTNLIFG QDPFGQVKNM VSSKWDDSGG FKLIPTKLSW VNSSEPGSVD  300
AHLHLQYNDI SNKISTSGHD MDRLLAFRAM TDKAPNKGLG APVDASYSDG ASDLRRALSL  360
LSAESWVPSN PEPVSDFQFT NARTLASHSA TCPTNTTTGI QQQDELPLAK PYPLNLQSNG  420
SQFPEFQLHK TTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-271582311184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213230KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401546.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_009401547.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_018681203.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_018681204.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
TrEMBLM0T0M40.0M0T0M4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P21990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-48squamosa promoter binding protein-like 2