PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P22310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 387aa    MW: 41837.7 Da    PI: 6.7165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P22310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13319364655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  GSMUA_Achr5P22310_001 319 SIAERVRRTRISERMKKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 364
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16316377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-13317368No hitNo description
Gene3DG3DSA:4.10.280.108.5E-16318374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-14319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MYGSPSGRPS EDLNLPYPPA GPSGLLRYRS APSSLLGEVC EDFLSVRASS PETETMLARF  60
LAPDLRDETQ DGPSGGAATA SGQSSPHFPP PQLPPSAQEQ QRQMPNHSSS ESPFRAVMGS  120
LTMEAAQLKH GDFGSSSNLI RHSSSPAGLF SHLNVDEEDL KICAIGYGMR RGTSGFMMDA  180
TDRSKGQISF SSRQNSVMSQ ISEMESDDMD GSSSPKDGGG GGRSYIPGFP VGSWDDSSPF  240
NNNSLSGLKG SRDGEEKMVT GLSPLELPQN GEVRNHGLGL FSLPRSTSEI ATIEKFLQFH  300
DAVPCKIRAK RGCATHPRSI AERVRRTRIS ERMKKLQELV PNMDKQTNTA DMLDLAVDYI  360
KDLQKQVKAL SESRASCSCS AGRQKPY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401509.10.0PREDICTED: transcription factor bHLH130
TrEMBLM0T0Q60.0M0T0Q6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P22310_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-59bHLH family protein