PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P22630_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 454aa MW: 49890.9 Da PI: 8.4184

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P22630_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.6	5.6e-41	178	254	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v+g+ +rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q GSMUA_Achr5P22630_001 178 CQVEGCNIDLSTAKDYHRKHRVCESHSKSPKVVVAGQDRRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQL 254 **************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	32.368	175	252	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.2E-33	175	239	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.03E-38	177	257	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.8E-32	178	251	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDWTSKMPFH FDWETLAPFN GEETEISEPA QELKSKIGSG VAMGNGSVYS SSGVLCSSSE 60 MGNCLSKSSI SASVDSSSKA MKRLPEVDFE SVGGFLVHQN KNKDLARVHD FRTSHAVESA 120 EGIKESVMGL KLGKRTYFED PCAGSNIKSP SSSASFTPST TSVKKSRVYQ QSLLSSYCQV 180 EGCNIDLSTA KDYHRKHRVC ESHSKSPKVV VAGQDRRFCQ QCSRFHALSE FDQKKRSCRR 240 RLSDHNARRR KPQLETISFN SSKLSTSYYD KQQAGLVFGR PPFSQMTTMA SSIWDNPSSF 300 KLTQTEGCWI KSSKTGGING QLHFPNYGNL NTVSTVGHNM DSLLPFKSVT ADVLNQDVTA 360 AFNLDGAPDL RCACSLLSTE SRVPPNARPA PSVQFVYTYN SDAAHPAMHT FNTTQDQQLL 420 EQVLPFSSGG QFQESLLFKS SLGMGFLDPS SQLG

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDWTSKMPFH FDWETLAPFN GEETEISEPA QELKSKIGSG VAMGNGSVYS SSGVLCSSSE  60
MGNCLSKSSI SASVDSSSKA MKRLPEVDFE SVGGFLVHQN KNKDLARVHD FRTSHAVESA  120
EGIKESVMGL KLGKRTYFED PCAGSNIKSP SSSASFTPST TSVKKSRVYQ QSLLSSYCQV  180
EGCNIDLSTA KDYHRKHRVC ESHSKSPKVV VAGQDRRFCQ QCSRFHALSE FDQKKRSCRR  240
RLSDHNARRR KPQLETISFN SSKLSTSYYD KQQAGLVFGR PPFSQMTTMA SSIWDNPSSF  300
KLTQTEGCWI KSSKTGGING QLHFPNYGNL NTVSTVGHNM DSLLPFKSVT ADVLNQDVTA  360
AFNLDGAPDL RCACSLLSTE SRVPPNARPA PSVQFVYTYN SDAAHPAMHT FNTTQDQQLL  420
EQVLPFSSGG QFQESLLFKS SLGMGFLDPS SQLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-26	178	251	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	250	KKRSCRRRLSDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401474.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X2
Refseq	XP_009401475.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12 isoform X2
Swissprot	A2YGR5	1e-106	SPL12_ORYSI; Squamosa promoter-binding-like protein 12
Swissprot	Q5Z818	1e-106	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBL	M0T0T8	0.0	M0T0T8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P22630_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3697	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	3e-51	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]