PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P22810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 257aa    MW: 28013.6 Da    PI: 6.8516
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P22810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028113135123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C + F ++  L  H++ H
  GSMUA_Achr5P22810_001 113 FSCNYCRRKFYSSQALGGHQNAH 135
                            89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-6110141No hitNo description
PROSITE profilePS5015711.385113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEVLGFTTET TLSQTTSTLS ETPHVVAKQE CMMVLEEAEE KQQEEGGEQP KFNEELLDLS  60
LSNKDAGEKS PSLSTSTPVL ELNLIESLGG AEPSTASGAL PHRGSPESEP RVFSCNYCRR  120
KFYSSQALGG HQNAHKRERS LTKNGARPGA RLGDHPSHRF PPSMAALPLH GMYGGRPLGI  180
QVHSMIHKPC YGSSLNERQP GVGRLMARED FCARTSALAA RFDEPQAVIG GHRWIDAGDQ  240
VIVGKKEVQK LDLTLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401454.10.0PREDICTED: zinc finger protein 1-like
TrEMBLM0T0V60.0M0T0V6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P22810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-31C2H2 family protein