PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P22840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 161aa    MW: 18071.7 Da    PI: 7.2763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P22840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17753252
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52
                           +y+GVr+++ +g+Wv+eIr+p         r++lg+f tae+Aa+a+++a+  
  GSMUA_Achr5P22840_001  7 RYRGVRQRH-WGSWVSEIRHP-----LlkMRIWLGTFETAEDAARAYDEAAVL 53
                           8*******9.**********8.....3349********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.51E-33664No hitNo description
PROSITE profilePS5103221.219764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-34765IPR001471AP2/ERF domain
PfamPF008473.1E-10752IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-20766IPR016177DNA-binding domain
SMARTSM003803.5E-37770IPR001471AP2/ERF domain
PRINTSPR003675.7E-11819IPR001471AP2/ERF domain
PRINTSPR003675.7E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MASSQKRYRG VRQRHWGSWV SEIRHPLLKM RIWLGTFETA EDAARAYDEA AVLMCGARAK  60
TNFPCSPHRP PSSHCKYLSA ALTAKLHRCN LLSLQAAQPV VMHAPRRPPV AAEHKEETSR  120
VAEENGHGGV EFSCLEEHHV EEMIEELLDS NLSMELCCAA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18665464ATERF1
3gcc_A1e-18665464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681121e-34EU968112.1 Zea mays clone 314589 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402024.11e-116PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-53ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM0T0V91e-115M0T0V9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P22840_0011e-116(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-34ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]