PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P23610_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

YABBY

Protein Properties

Length: 194aa MW: 21123 Da PI: 6.5004

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P23610_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	165.1	5.2e-51	9	158	5	167
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 + +eq+ yvqC+fC til+vsvP +sl+kvvtvrCGhCt llsv+l +s ++++e +l +e++++e +l + ++ GSMUA_Achr5P23610_001 9 ELPEQLGYVQCSFCATILLVSVPCSSLLKVVTVRCGHCTGLLSVSLVRTS-VVPVEL------LASLGDEEGKQE-DLG----PKACS 84 689**************************************9987654.334432......223333333322.222....22333 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 s + + ene+++ +r+p +++PPekrqr+Psayn fi+eei rika P+i+h+eafsaaaknWahfP+i GSMUA_Achr5P23610_001 85 SGGGGVGE-AENETRSPTRAPIINKPPEKRQRAPSAYNHFIREEIVRIKAREPNITHKEAFSAAAKNWAHFPRIQ 158 33333333.6788999999999*************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.3E-57	11	159	IPR006780	YABBY protein
SuperFamily	SSF47095	4.71E-7	100	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.7E-4	108	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSSSNPLLEL PEQLGYVQCS FCATILLVSV PCSSLLKVVT VRCGHCTGLL SVSLVRTSVV 60 PVELLASLGD EEGKQEDLGP KACSSGGGGV GEAENETRSP TRAPIINKPP EKRQRAPSAY 120 NHFIREEIVR IKAREPNITH KEAFSAAAKN WAHFPRIQHN EDGKSCSSRE GKKICDGHVD 180 EEFAFFPSTM MIDD

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018681249.1	1e-132	PREDICTED: protein YABBY 7-like
Swissprot	Q9LDT3	4e-48	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	M0T136	1e-141	M0T136_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P23610_001	1e-142	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-43	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]