PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P23700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 255aa    MW: 27765.6 Da    PI: 7.7282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P23700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09154202355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++iN++++ L+ l+P +    +k +  a++L + ++Y++sLq
  GSMUA_Achr5P23700_001 154 NSHSLAERARREKINERMSCLQGLVPGC----HKAMGIAAMLDEIINYVQSLQ 202
                            58*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.98E-10149206No hitNo description
SuperFamilySSF474596.54E-17149216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.173151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-17152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6154202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLDLSCWALS PRKPSHISFI YIACERDDEL PAFSFHLKPS ISCSYGGLLC QFPELNDTAM  60
DHPSSGLMCY SDENSSSHQT DELLTAIVGN LTSLLPATAA SAISFASNNS ALSGTATKSA  120
EANPKKKKKK KKKKNEDMPK EVVHVRARRG QATNSHSLAE RARREKINER MSCLQGLVPG  180
CHKAMGIAAM LDEIINYVQS LQNQVQMLSM KLAVCESSLE RMQAAATLQE EPNSRFAQDE  240
VGGGCGAAFV SPNHF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124133KKKKKKKKKK
2125133KKKKKKKKK
3127133KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401352.21e-140PREDICTED: transcription factor bHLH75-like
TrEMBLM0T1450.0M0T145_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P23700_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-38BR enhanced expression 1