PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P24560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27208.1 Da    PI: 9.8249
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P24560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33.1e-261059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ri+n++ rqvtfskRr+g+lKKA+EL +LCdaev v++fs tg++y+y+s
  GSMUA_Achr5P24560_001 10 RIDNSTSRQVTFSKRRKGLLKKAKELAILCDAEVGVVVFSATGRVYDYAS 59
                           8***********************************************86 PP
2K-box707.5e-2481169998
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            + ++++  +q+e++ L++++++L +++R+l+Ge L+ L++k+Lq++e+qLe+ l  iR++K++llle+i+el +k   +++en++L +
  GSMUA_Achr5P24560_001  81 NPSSETMFWQREATSLRQRLHKLHETHRQLMGE-LSGLDIKDLQNIENQLETNLDGIRKRKEQLLLEEIQELHRKGSLVHQENMELYR 167
                            5678899*************************8.****************************************************98 PP

                  K-box  97 kl 98 
                            ++
  GSMUA_Achr5P24560_001 168 NI 169
                            87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.838161IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-38160IPR002100Transcription factor, MADS-box
CDDcd002654.59E-42277No hitNo description
SuperFamilySSF554557.43E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014866.1E-2383169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.44186175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSTSRQVT FSKRRKGLLK KAKELAILCD AEVGVVVFSA TGRVYDYAST  60
SMKSVMERYT RAKGEHHLVM NPSSETMFWQ REATSLRQRL HKLHETHRQL MGELSGLDIK  120
DLQNIENQLE TNLDGIRKRK EQLLLEEIQE LHRKGSLVHQ ENMELYRNIN IMCQENTELH  180
RKVDATREAN DKNSVMPDGF SKPEEANVLI HLQLSQPHQQ AEGLQLKAPK LGFQLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20176176MEF2C
5f28_B1e-20176176MEF2C
5f28_C1e-20176176MEF2C
5f28_D1e-20176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401265.11e-176PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-100MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLM0T1D11e-175M0T1D1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P24560_0011e-175(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-86AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]