PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P24630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 225aa    MW: 24830.8 Da    PI: 10.6778
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P24630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind266.81.1e-8169225144301
              GAGA_bind 144 akekkkkkkrqrakkp.kekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGG 229
                            ake++ kk++q +++p k +k kk+kk + ++k++++    +  r +a kk++d+v+ng +lD+s++P+PvCsCtG+lrqCY+WG GG
  GSMUA_Achr5P24630_001  69 AKEAPLKKRSQAQARPcKPSKPKKPKKVP-TPKDETNGR--SgGRGRAIKKNTDIVINGFDLDISRIPTPVCSCTGTLRQCYRWGVGG 153
                            34444444444444441445555666643.443333333..3379******************************************* PP

              GAGA_bind 230 WqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            WqSaCCtt+iS+yPLP+stkrrgaRi grKmSqgafkk+LekLa+eGy+lsnp+DL+ +WAkHGtnkfvtir
  GSMUA_Achr5P24630_001 154 WQSACCTTSISMYPLPMSTKRRGARICGRKMSQGAFKKVLEKLAGEGYNLSNPIDLRPYWAKHGTNKFVTIR 225
                            ***********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.3E-6146IPR010409GAGA-binding transcriptional activator
SMARTSM012265.3E-1151225IPR010409GAGA-binding transcriptional activator
PfamPF062172.0E-8166225IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDGDGGMGMR NWAYYEQTLK GNLGLQLMSP VAAERESTKP LLSNGGFLRR DCDVAEPSVP  60
MGFMRNVTAK EAPLKKRSQA QARPCKPSKP KKPKKVPTPK DETNGRSGGR GRAIKKNTDI  120
VINGFDLDIS RIPTPVCSCT GTLRQCYRWG VGGWQSACCT TSISMYPLPM STKRRGARIC  180
GRKMSQGAFK KVLEKLAGEG YNLSNPIDLR PYWAKHGTNK FVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995PKKPKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402129.11e-131PREDICTED: protein Barley B recombinant-like
SwissprotQ9SKD07e-69BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLM0T1D81e-166M0T1D8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P24630_0011e-166(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.36e-68basic pentacysteine 2