PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P24680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 119aa    MW: 12970.9 Da    PI: 12.3139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P24680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-191766355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr+++ +g+++AeIrdp  ng  +r++lg+f taeeAa a+++a+ +++g
  GSMUA_Achr5P24680_001 17 YRGVRQRP-WGKFAAEIRDPGRNG--ARVWLGTFSTAEEAAIAYDRAAFRIRG 66
                           9*******.**********95554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-321674IPR001471AP2/ERF domain
CDDcd000181.85E-261674No hitNo description
PfamPF008478.6E-141666IPR001471AP2/ERF domain
SMARTSM003805.5E-391680IPR001471AP2/ERF domain
PROSITE profilePS5103224.211674IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-241675IPR016177DNA-binding domain
PRINTSPR003672.1E-111728IPR001471AP2/ERF domain
PRINTSPR003672.1E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MPPPPAPFPA RERGRNYRGV RQRPWGKFAA EIRDPGRNGA RVWLGTFSTA EEAAIAYDRA  60
AFRIRGSRAL LNFPLLIGSQ GTPPPPSTLP PLSGNKRRKR VAALASSTGT AEPERLVRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-361379268ATERF1
3gcc_A5e-361379268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402135.22e-78PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803373e-35EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLM0T1E31e-76M0T1E3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P24680_0012e-77(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-24ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]