PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P24960_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 184aa MW: 21211.3 Da PI: 10.1814

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P24960_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.7e-10	85	132	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+ ++P + +k K+ L + ++Y+ sLq GSMUA_Achr5P24960_001 85 NHSLAERVRREKINQRMKLLQGIVPGC----DKIAGKILLLDEIINYVLSLQ 132 79**********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-16	79	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.91E-7	79	136	No hit	No description
PROSITE profile	PS50888	14.107	81	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	81	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-7	85	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-7	87	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MVVDHHSAEE FPTMQGSLQK KRKSRDVICQ SSEQSNEVKG NRRKQKKSTE ETSTPDRKRQ 60 RTQVSGEPPT GYIYVRAKRG QATDNHSLAE RVRREKINQR MKLLQGIVPG CDKIAGKILL 120 LDEIINYVLS LQRQVEVLSM KLASMDLKFR DLFTESIGYV NQQQVMSRKN YNFLLDCCPN 180 GEHK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ010934	1e-71	FJ010934.1 Musa balbisiana microsatellite MbIIHR28 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790706.2	3e-50	transcription factor bHLH137-like
Swissprot	Q93W88	8e-38	BH137_ARATH; Transcription factor bHLH137
Swissprot	Q9SRT2	4e-37	BH062_ARATH; Transcription factor bHLH62
TrEMBL	M0T1H1	1e-134	M0T1H1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P24960_001	1e-135	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2358	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	3e-40	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]